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Genomic sequences for the rice genomes
Full release sequence and daily updates for Beijing indica Superscaffold (93-11)
Full release sequence and daily updates for Beijing indica Superscaffold (PA64s)
Superscaffold of Beijing indica    FTP1    FTP2
Full release sequence and daily updates for Beijing indica Superscaffold
Superscaffold of Syngenta japonica    FTP1    FTP2
Full release sequence and daily updates for Syngenta japonica Superscaffold
Scaffold of Beijing indica    FTP1    FTP2
Full release sequence and daily updates for Beijing indica Scaffold
Scaffold of Syngenta japonica    FTP1    FTP2
Full release sequence and daily updates for Syngenta japonica Scaffold
Contig of Beijing indica    FTP1    FTP2
Full release sequence and daily updates for Beijing indica Contig
Contig of Syngenta japonica    FTP1    FTP2
Full release sequence and daily updates for Syngenta japonica Contig
Pseudomolecules of IRGSP japonica (build 4)    FTP1    FTP2
Full release sequence and daily updates for japonica (IRGSP) Chromosome.
Chromosome of Syngenta japonica     FTP1    FTP2
Full release sequence and daily updates for japonica Chromosome of Syngenta.
Chromosome of Beijing indica     FTP1    FTP2
Full release sequence and daily updates for indica Chromosome of Beijing.
 
Annotation data for the rice genomes
Indica (93-11)genomes annotation
Indica (PA64s)genomes annotation
Markers    Beijing indica    Syngenta japonica
BAC ends    Beijing indica    Syngenta japonica
Repeats    Beijing indica    Syngenta japonica
nr-KOME cDNAs    japonica cDNAs
 
  Gene sets from PLoS 2005 (Yu J, Wang J, et al. 2005. The genomes of Oryza sativa: a history of duplications. PLoS Biol 3: e38)
 
BGF genes    Beijing indica    Syngenta japonica
FgeneSH genes    Beijing indica    Syngenta japonica
 
  Pre-publication gene sets (Re-annotation of the rice genomes by selective pre-masking of intergenic transposable elements)
 
BGF genes    Beijing indica    Syngenta japonica    IRGSP japonica (build 4)
Fgenesh genes    Beijing indica    Syngenta japonica    IRGSP japonica (build 4)
 
  Pre-publication gene sets (Improved gene annotation of the rice (Oryza sativa) genomes, submited to BMC Genomics)
 
repeats    Beijing indica    Syngenta japonica    IRGSP japonica
GLEAN genes    Beijing indica    Syngenta japonica    IRGSP japonica
ncRNA genes    Beijing indica    Syngenta japonica    IRGSP japonica
 
SNPs between indica and japonica subspecies

Indica vs Syngenta    Genome alignment     SNP/Indel information
Indica vs IRGSP    Genome alignment     SNP/Indel information
Instruction of file formats       Readme
 
Indels among 1767 worldwide rice varieties

1767 rice genomes vs IRGSP (v7)     InDels with major allele difference>=3bp.gff
Instruction of file formats    Readme.doc
Transcriptome Data

SAGE    Instruction    SAGE data     Potential origin
Tools

RePS    FTP1    FTP2
ReAS    FTP1    FTP2
    BGI Last Modified 28 Oct, 2008     Feedback_
    Supported by China National Grid Project 2002AA104250